But let your communication be Yea, yea; Nay, nay: for whatsoever is more than these cometh of evil
Saturday, March 8th, 2008

How to impute marker genotypes

I am currently playing with MACH and SNPMStat to impute marker based on public datasets. I do not have any opinion about the usefulness of this approach – largely due to the fact that ~10% of my allele coding is different to the public hapmap data.
BTW the hapmap people have been very helpful in explaining to me, how imputing can be done by a web service. For that purpose llocate your region of interest then select in the dropdown “Download Impute Data” from the ‘Reports & Analysis’ section. The configuration page lets you upload a .ped and .dat files, yea, yea.
imputedata.png

Related Posts: Autosomal inheritance of sex-linked marker, 3D LD, Blink Plink, INDELligent
Categories: Computer + Software,Genetics + Biology
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Trackback: http://www.wjst.de/blog/blog/2008/03/08/how-to-impute-marker-genotypes/


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