{"id":483,"date":"2006-12-11T16:34:33","date_gmt":"2006-12-11T14:34:33","guid":{"rendered":"http:\/\/www.wjst.de\/blog\/papers\/supplements\/2007allergysuppl\/"},"modified":"2019-03-01T13:08:27","modified_gmt":"2019-03-01T12:08:27","slug":"2007allergysuppl","status":"publish","type":"page","link":"https:\/\/www.wjst.de\/blog\/papers\/supplements\/2007allergysuppl\/","title":{"rendered":"2007AllergySuppl"},"content":{"rendered":"<h3>Public data mining shows extended linkage disequilibrium around ADAM33<\/h3>\n<p>Allergy 62 (4), 444\u00e2\u20ac\u201c446.<br \/>\ndoi:10.1111\/j.1398-9995.2006.01298.x<\/p>\n<p>The <a href=\"http:\/\/www.blackwell-synergy.com\/doi\/full\/10.1111\/j.1398-9995.2006.01298.x?cookieSet=1\">Allergy website<\/a> seems to omit the online supplement. Please find the figures here.<\/p>\n<p>If you wish to draw your own figure, download <a href=\"http:\/\/www.broad.mit.edu\/mpg\/haploview\/index.php\">haploview 4<\/a> and import the data for <a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/hapmap_ceu.dat\">Figure 1<\/a>, <a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/perlegen_ceu.dat\">Figure 2<\/a> and Figure 3 <a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/affx_ceu.info\">A<\/a>|<a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/affx_ceu.ped\">B<\/a><\/p>\n<h3>Figure 1<\/h3>\n<p>Pairwise linkage disequilibrium on a 270 kbp region on chr20 (3,430,000..3,700,000 bp) in CEU (European Hapmap) individuals. Note ADAM33 SNPs showing both upstream and downstream LD.<\/p>\n<p>white color: LOD &lt; 2 and D&#8217; &lt; 1<br \/>\nblue: LOD &lt; 2 and D&#8217; = 1<br \/>\nshades of pink\/red: LOD \u00e2\u2030\u00a5 2 and D&#8217; &lt; 1<br \/>\nbright red: LOD \u00e2\u2030\u00a5 2 and D&#8217; = 1<\/p>\n<p><em>click to zoom in<\/em><br \/>\n<a class=\"imagelink\" title=\"\" href=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/FIG1.png\" data-rel=\"key-image-0\" data-rl_title=\"\" data-rl_caption=\"\"><img decoding=\"async\" id=\"image484\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/FIG1.png\" alt=\"Figure 1\" width=\"60%\" height=\"60%\" \/><\/a><\/p>\n<h3>Figure 2<\/h3>\n<p>Pairwise linkage disequilibrium on a 270 kbp region on chr20 (3,430,000..3,700,000 bp) in CEU (European Hapmap) individuals in the Perlegen data set. Note the gap around ADAM33.<\/p>\n<p><a class=\"imagelink\" title=\"\" href=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/FIG2.png\" data-rel=\"key-image-1\" data-rl_title=\"\" data-rl_caption=\"\"><img decoding=\"async\" id=\"image485\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/FIG2.png\" alt=\"Figure 2\" width=\"60%\" height=\"60%\" \/><\/a><\/p>\n<h3>Figure 3<\/h3>\n<p>Pairwise linkage disequilibrium on a 260 kbp region on chr20:3,390,000..3,650,000 in European Hapmap individuals tested with Affymetrix 500 K SNP chips. Note the low resolution at ADAM33. SNP rs598418 shows LD to SNPs in ATRN and SN.<\/p>\n<p><a class=\"imagelink\" title=\"\" href=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/FIG3.png\" data-rel=\"key-image-2\" data-rl_title=\"\" data-rl_caption=\"\"><img decoding=\"async\" id=\"image486\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/paper\/2006AllergySuppl\/FIG3.png\" alt=\"Figure 3\" width=\"60%\" height=\"60%\" \/><\/a><\/p>\n<h3>Addendum<\/h3>\n<p><a href=\"http:\/\/egp.gs.washington.edu\/data\/adam33\/\">NIEHS<\/a> has resequenced ADAM33<\/p>\n\n<p>&nbsp;<\/p>\n<div class=\"bottom-note\">\n  <span class=\"mod1\">CC-BY-NC Science Surf , accessed 09.06.2026<\/span>\n <\/div>","protected":false},"excerpt":{"rendered":"<p>Public data mining shows extended linkage disequilibrium around ADAM33 Allergy 62 (4), 444\u00e2\u20ac\u201c446. doi:10.1111\/j.1398-9995.2006.01298.x The Allergy website seems to omit the online supplement. Please find the figures here. If you wish to draw your own figure, download haploview 4 and import the data for Figure 1, Figure 2 and Figure 3 A|B Figure 1 Pairwise &hellip; <a href=\"https:\/\/www.wjst.de\/blog\/papers\/supplements\/2007allergysuppl\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">2007AllergySuppl<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":338,"menu_order":5,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-483","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/pages\/483","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/comments?post=483"}],"version-history":[{"count":1,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/pages\/483\/revisions"}],"predecessor-version":[{"id":12145,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/pages\/483\/revisions\/12145"}],"up":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/pages\/338"}],"wp:attachment":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/media?parent=483"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}