{"id":11303,"date":"2018-12-27T09:56:30","date_gmt":"2018-12-27T08:56:30","guid":{"rendered":"http:\/\/www.wjst.de\/blog\/?p=11303"},"modified":"2022-12-01T08:18:51","modified_gmt":"2022-12-01T06:18:51","slug":"crispr-babies-doubt-on-the-sanger-sequences","status":"publish","type":"post","link":"https:\/\/www.wjst.de\/blog\/sciencesurf\/2018\/12\/crispr-babies-doubt-on-the-sanger-sequences\/","title":{"rendered":"CRISPR CAS Babies: Doubt on the Sanger sequences"},"content":{"rendered":"<p>Using the new <a href=\"https:\/\/indelphi.giffordlab.mit.edu\/about\">inDelphi<\/a> (<a href=\"https:\/\/rdcu.be\/baVVn\">Nature 2018<\/a>) prediction we can examine the gRNA guided cut used for the CRISPR Baby experiment. The results are somewhat\u00a0<a href=\"https:\/\/www.crisprindelphi.design\/single_mESC_TOKypXN0nby3EoIZv4xc~gQEX003f0etrVY~BgEI-RVZ.MaFN00UYTFNULNcBe~Ym6hDhWIl2EAH-3KdeWoDlSJVGmJvoC5shYpDjjZabDdHy6y8cz0Z0qHT88mGePGp8YCP_TGTCA_288\">unexpected<\/a><\/p>\n<p><a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen1.png\" data-rel=\"key-image-0\" data-rl_title=\"\" data-rl_caption=\"\" title=\"\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-11305\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen1-620x564.png\" alt=\"\" width=\"620\" height=\"564\" srcset=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen1-620x564.png 620w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen1-768x699.png 768w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen1-549x500.png 549w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen1.png 1038w\" sizes=\"auto, (max-width: 620px) 100vw, 620px\" \/><\/a><\/p>\n<p>Maybe it is difficult to extrapolate from mouse to human embryonic stem cells but one observed event is not even listed here.<\/p>\n<figure id=\"attachment_11306\" aria-describedby=\"caption-attachment-11306\" style=\"width: 620px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen2.png\" data-rel=\"key-image-1\" data-rl_title=\"\" data-rl_caption=\"\" title=\"\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-11306 size-medium\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen2-620x539.png\" alt=\"\" width=\"620\" height=\"539\" srcset=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen2-620x539.png 620w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen2-768x668.png 768w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen2-575x500.png 575w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen2.png 946w\" sizes=\"auto, (max-width: 620px) 100vw, 620px\" \/><\/a><figcaption id=\"caption-attachment-11306\" class=\"wp-caption-text\">The results marked with a star have been observed<\/figcaption><\/figure>\n<p>The -15 genotype has a probability of less than 0.05%. For +1 genotype the probability is 0.09% and for the -4 deletion it is 3.74%.<\/p>\n<p>Looking therefore again at the Hong Kong slides of He Jiankui, I am getting doubts if the chromatogram \u00a0of embryo 2 \u00a0is correct interpreted even if we admit that the labels of embryo 1 and 2 have been switched..<\/p>\n<figure id=\"attachment_11307\" aria-describedby=\"caption-attachment-11307\" style=\"width: 620px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen3.png\" data-rel=\"key-image-2\" data-rl_title=\"\" data-rl_caption=\"\" title=\"\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-11307 size-medium\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen3-620x193.png\" alt=\"\" width=\"620\" height=\"193\" srcset=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen3-620x193.png 620w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen3-768x239.png 768w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2018\/12\/screen3-1608x500.png 1608w\" sizes=\"auto, (max-width: 620px) 100vw, 620px\" \/><\/a><figcaption id=\"caption-attachment-11307\" class=\"wp-caption-text\">Color enhanced + sharpened version Hong Kong slide.\u00a0Unfortunately the chromatograms do not expand to the left also.<\/figcaption><\/figure>\n<p>Embryo 2 does not show<a href=\"http:\/\/sanger chromatogram\">\u00a0a clean<\/a>\u00a0 sequence at all and certainly not a -4\/+1 genotype as indicated. The sequence &#8220;ATTTTCCATACAG-ATTCAATTCTGGACTAAAATAAATACCT&#8221; isn&#8217;t even a human sequence at all.<\/p>\n\n<p>&nbsp;<\/p>\n<div class=\"bottom-note\">\n  <span class=\"mod1\">CC-BY-NC Science Surf , accessed 05.04.2026<\/span>\n <\/div>","protected":false},"excerpt":{"rendered":"<p>Using the new inDelphi (Nature 2018) prediction we can examine the gRNA guided cut used for the CRISPR Baby experiment. The results are somewhat\u00a0unexpected Maybe it is difficult to extrapolate from mouse to human embryonic stem cells but one observed event is not even listed here. The -15 genotype has a probability of less than &hellip; <a href=\"https:\/\/www.wjst.de\/blog\/sciencesurf\/2018\/12\/crispr-babies-doubt-on-the-sanger-sequences\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">CRISPR CAS Babies: Doubt on the Sanger sequences<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[2],"tags":[3126,3079],"class_list":["post-11303","post","type-post","status-publish","format-standard","hentry","category-genetics-biology","tag-crispr-cas","tag-genome-editing"],"_links":{"self":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/11303","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/comments?post=11303"}],"version-history":[{"count":12,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/11303\/revisions"}],"predecessor-version":[{"id":21167,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/11303\/revisions\/21167"}],"wp:attachment":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/media?parent=11303"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/categories?post=11303"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/tags?post=11303"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}