{"id":1316,"date":"2007-11-08T08:25:36","date_gmt":"2007-11-08T06:25:36","guid":{"rendered":"http:\/\/www.wjst.de\/blog\/2007\/11\/08\/gps-for-biological-pathways\/"},"modified":"2007-11-08T08:25:36","modified_gmt":"2007-11-08T06:25:36","slug":"gps-for-biological-pathways","status":"publish","type":"post","link":"https:\/\/www.wjst.de\/blog\/sciencesurf\/2007\/11\/gps-for-biological-pathways\/","title":{"rendered":"GPS for biological pathways"},"content":{"rendered":"<p>After running a dual core CPU for two weeks I have a list here of all transcripts that are associated with the &#8220;ORMDL3&#8221; SNP gene cluster. Making sense from this list is a difficult task even with dozen of dedicated websites.<br \/>\nTo get an overview of what is available I would start<!--more--> at the <a href=\"http:\/\/homepage.univie.ac.at\/herbert.mayer\/MainPATH.html\">Bioinformatics World<\/a> who has everything about<\/p>\n<ul>\n<li>Pathways and Interactions Databases<\/li>\n<li>Pathways<\/li>\n<li>Enzymes<\/li>\n<li>GO Portals<\/li>\n<li>GO Browsers<\/li>\n<li>GO Annotators<\/li>\n<li>GO Data Mining<\/li>\n<li>Integrated Functional Data Mining<\/li>\n<\/ul>\n<p>My favorite annotation server is <a href=\"http:\/\/david.abcc.ncifcrf.gov\/\">DAVID<\/a> &#8211; <strong>D<\/strong>atabase for <strong>A<\/strong>nnotation, <strong>V<\/strong>isualization and <strong>I<\/strong>ntegrated <strong>D<\/strong>iscovery which has a rather straightforward data entry and analysis model.<\/p>\n<p><a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2007\/11\/david.png\" title='' data-rel=\"key-image-0\" data-rl_title=\"\" data-rl_caption=\"\"><img src='https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2007\/11\/david.png' alt='david.png' \/><\/a><\/p>\n\n<p>&nbsp;<\/p>\n<div class=\"bottom-note\">\n  <span class=\"mod1\">CC-BY-NC Science Surf , accessed 08.04.2026<\/span>\n <\/div>","protected":false},"excerpt":{"rendered":"<p>After running a dual core CPU for two weeks I have a list here of all transcripts that are associated with the &#8220;ORMDL3&#8221; SNP gene cluster. Making sense from this list is a difficult task even with dozen of dedicated websites. To get an overview of what is available I would start &nbsp; CC-BY-NC Science &hellip; <a href=\"https:\/\/www.wjst.de\/blog\/sciencesurf\/2007\/11\/gps-for-biological-pathways\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">GPS for biological pathways<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[8,2,9],"tags":[1362,1175,1363,1364,1360,1031,1365,279,1366,1361,207,1177],"class_list":["post-1316","post","type-post","status-publish","format-standard","hentry","category-asthma-allergy","category-genetics-biology","category-computer-software","tag-analysis_model","tag-annotation_server","tag-bioinformatics","tag-data_entry","tag-data_mining","tag-discovery","tag-enzymes","tag-gene_cluster","tag-interactions","tag-pathways","tag-snp","tag-transcripts"],"_links":{"self":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/1316","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/comments?post=1316"}],"version-history":[{"count":0,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/1316\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/media?parent=1316"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/categories?post=1316"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/tags?post=1316"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}