{"id":1634,"date":"2008-07-02T11:11:48","date_gmt":"2008-07-02T09:11:48","guid":{"rendered":"http:\/\/www.wjst.de\/blog\/?page_id=1634"},"modified":"2008-07-02T11:11:48","modified_gmt":"2008-07-02T09:11:48","slug":"view-plink-gwa-results-as-genome-browser-track","status":"publish","type":"post","link":"https:\/\/www.wjst.de\/blog\/sciencesurf\/2008\/07\/view-plink-gwa-results-as-genome-browser-track\/","title":{"rendered":"View plink GWA results as genome browser track"},"content":{"rendered":"<p>This R script will parse <a href=\"http:\/\/pngu.mgh.harvard.edu\/~purcell\/plink\">plink<\/a>&#8216;s GC adjusted output to a GFF file that can be uploaded as <a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgGateway\">genome browser<\/a> track file. Just adjust the pathname at the beginning&#8230;<\/p>\n<p><a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/plugins\/scripts\/gwa.R\">script<\/a><br \/>\n|wj_gwa.R|<\/p>\n\n<p>&nbsp;<\/p>\n<div class=\"bottom-note\">\n  <span class=\"mod1\">CC-BY-NC Science Surf , accessed 30.04.2026<\/span>\n <\/div>","protected":false},"excerpt":{"rendered":"<p>This R script will parse plink&#8216;s GC adjusted output to a GFF file that can be uploaded as genome browser track file. Just adjust the pathname at the beginning&#8230; script |wj_gwa.R| &nbsp; CC-BY-NC Science Surf , accessed 30.04.2026<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[8],"tags":[],"class_list":["post-1634","post","type-post","status-publish","format-standard","hentry","category-asthma-allergy"],"_links":{"self":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/1634","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/comments?post=1634"}],"version-history":[{"count":0,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/1634\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/media?parent=1634"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/categories?post=1634"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/tags?post=1634"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}