{"id":1694,"date":"2008-09-10T17:09:38","date_gmt":"2008-09-10T15:09:38","guid":{"rendered":"http:\/\/www.wjst.de\/blog\/?p=1694"},"modified":"2008-09-10T17:18:29","modified_gmt":"2008-09-10T15:18:29","slug":"snp-batch-annotation-of-gwas","status":"publish","type":"post","link":"https:\/\/www.wjst.de\/blog\/sciencesurf\/2008\/09\/snp-batch-annotation-of-gwas\/","title":{"rendered":"SNP batch annotation of GWAs"},"content":{"rendered":"<p>Genowatch (<a href=\"http:\/\/nar.oxfordjournals.org\/cgi\/content\/full\/gkn214?ijkey=zVD3AS0L61KzpRp&#038;keytype=ref\">paper<\/a>|<a href=\"http:\/\/genepipe.ngc.sinica.edu.tw\/genominer\/menu.do\">website<\/a>) is doing pretty well by annotating large SNP sets that would require otherwise numerous hours to map their position on genes, biological function and pathways.<!--more--><br \/>\n<a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2008\/09\/genowatch.png\" data-rel=\"key-image-0\" data-rl_title=\"\" data-rl_caption=\"\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2008\/09\/genowatch.png\" alt=\"\" title=\"\" width=\"480\" height=\"338\" class=\"alignnone size-full wp-image-1695\" \/><\/a><br \/>\nA set of 60 SNPs took about 15 minutes to produce the following figure (which will be part of <a href=\"http:\/\/dev.ersnet.org\/670-post-genome-respiratory-epidemology-ii-an-interdisciplinary-challenge.htm\">my fortcoming presentation in Cernay<\/a>. Very nice &#8211; although the interpretation is getting really difficult.<br \/>\n<a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2008\/09\/genowatch2.png\" data-rel=\"key-image-1\" data-rl_title=\"\" data-rl_caption=\"\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2008\/09\/genowatch2.png\" alt=\"\" title=\"\" width=\"480\" height=\"375\" class=\"alignnone size-full wp-image-1696\" \/><\/a><br \/>\n<a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2008\/09\/genowatch2.png\" data-rel=\"key-image-1\" data-rl_title=\"\" data-rl_caption=\"\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2008\/09\/genowatch2.png\" alt=\"\" title=\"\" width=\"480\" height=\"375\" class=\"alignnone size-full wp-image-1696\" \/><\/a><\/p>\n\n<p>&nbsp;<\/p>\n<div class=\"bottom-note\">\n  <span class=\"mod1\">CC-BY-NC Science Surf , accessed 28.04.2026<\/span>\n <\/div>","protected":false},"excerpt":{"rendered":"<p>Genowatch (paper|website) is doing pretty well by annotating large SNP sets that would require otherwise numerous hours to map their position on genes, biological function and pathways. &nbsp; CC-BY-NC Science Surf , accessed 28.04.2026<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[8,2,9],"tags":[2026,418,1363,1114],"class_list":["post-1694","post","type-post","status-publish","format-standard","hentry","category-asthma-allergy","category-genetics-biology","category-computer-software","tag-snp-set","tag-annotation","tag-bioinformatics","tag-gwa"],"_links":{"self":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/1694","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/comments?post=1694"}],"version-history":[{"count":0,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/1694\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/media?parent=1694"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/categories?post=1694"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/tags?post=1694"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}