{"id":3212,"date":"2009-11-25T09:57:31","date_gmt":"2009-11-25T07:57:31","guid":{"rendered":"http:\/\/www.wjst.de\/blog\/?p=3212"},"modified":"2009-11-25T10:04:00","modified_gmt":"2009-11-25T08:04:00","slug":"best-ngs-alignment-viewer","status":"publish","type":"post","link":"https:\/\/www.wjst.de\/blog\/sciencesurf\/2009\/11\/best-ngs-alignment-viewer\/","title":{"rendered":"Best NGS alignment viewer"},"content":{"rendered":"<p><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2009\/11\/Bild-2-150x150.png\" alt=\"Bild 2\" title=\"Bild 2\" width=\"150\" height=\"150\" class=\"aligncenter size-thumbnail wp-image-3213\" style=\"display:inline;float:left;margin-right:20px\" \/><a href=\"http:\/\/lh3lh3.users.sourceforge.net\/\">Heng Li<\/a> has an excellent overview table on next generation sequence alignment viewers (as well as alignment programs) &#8211; thanks to TB for pointing me to that site. The Broad Institute has just bought another 30 Illumina Genome Analyzer &#8211; they now own 89 so the Broad people might have clearly a need for visualizing data.<br \/>\nThe best choice is not easy to make &#8211; I am trying now the <a href=\"http:\/\/www.broad.mit.edu\/igv\/\">IGV<\/a> in my lung sequence project. Annother interesting piece of software not listed by the Heng Li table is<a href=\"http:\/\/sourceforge.net\/projects\/annoj\/\"> annoj<\/a> that looks promising too, yea, yea.<\/p>\n\n<p>&nbsp;<\/p>\n<div class=\"bottom-note\">\n  <span class=\"mod1\">CC-BY-NC Science Surf , accessed 02.05.2026<\/span>\n <\/div>","protected":false},"excerpt":{"rendered":"<p>Heng Li has an excellent overview table on next generation sequence alignment viewers (as well as alignment programs) &#8211; thanks to TB for pointing me to that site. The Broad Institute has just bought another 30 Illumina Genome Analyzer &#8211; they now own 89 so the Broad people might have clearly a need for visualizing &hellip; <a href=\"https:\/\/www.wjst.de\/blog\/sciencesurf\/2009\/11\/best-ngs-alignment-viewer\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Best NGS alignment viewer<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[2],"tags":[26,2575],"class_list":["post-3212","post","type-post","status-publish","format-standard","hentry","category-genetics-biology","tag-genome","tag-visualisation"],"_links":{"self":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/3212","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/comments?post=3212"}],"version-history":[{"count":14,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/3212\/revisions"}],"predecessor-version":[{"id":3248,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/3212\/revisions\/3248"}],"wp:attachment":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/media?parent=3212"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/categories?post=3212"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/tags?post=3212"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}