{"id":472,"date":"2006-12-06T13:52:57","date_gmt":"2006-12-06T11:52:57","guid":{"rendered":"http:\/\/www.wjst.de\/blog\/2006\/12\/06\/new-ld-measure\/"},"modified":"2006-12-06T13:53:54","modified_gmt":"2006-12-06T11:53:54","slug":"new-ld-measure","status":"publish","type":"post","link":"https:\/\/www.wjst.de\/blog\/sciencesurf\/2006\/12\/new-ld-measure\/","title":{"rendered":"New LD measure"},"content":{"rendered":"<p>There is a new way to calculate LD  that may overcome the limitations of D&#8217; and R^2 that are not easily generalizable to multiallelic markers (or haplotypes) and depend on the distribution of SNPs (or haplotypes).<br \/>\nThe paper is at <a href=\"http:\/\/www.biomedcentral.com\/1471-2156\/7\/54\">BMC<\/a>, the sources at the <a href=\"http:\/\/www.stat.uiuc.edu\/~yuguo\/software\/volume\/\">authors&#8217; website<\/a>. I have slightly modified the program to allow input and output file names on the command line before <a id=\"p471\" href=\"input_2x2.zip\" title=\"input_2x2.zip\">compiling<\/a> it. Use at your own risk, yea, yea.<\/p>\n\n<p>&nbsp;<\/p>\n<div class=\"bottom-note\">\n  <span class=\"mod1\">CC-BY-NC Science Surf , accessed 21.05.2026<\/span>\n <\/div>","protected":false},"excerpt":{"rendered":"<p>There is a new way to calculate LD that may overcome the limitations of D&#8217; and R^2 that are not easily generalizable to multiallelic markers (or haplotypes) and depend on the distribution of SNPs (or haplotypes). The paper is at BMC, the sources at the authors&#8217; website. I have slightly modified the program to allow &hellip; <a href=\"https:\/\/www.wjst.de\/blog\/sciencesurf\/2006\/12\/new-ld-measure\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">New LD measure<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[2,9],"tags":[],"class_list":["post-472","post","type-post","status-publish","format-standard","hentry","category-genetics-biology","category-computer-software"],"_links":{"self":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/472","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/comments?post=472"}],"version-history":[{"count":0,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/472\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/media?parent=472"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/categories?post=472"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/tags?post=472"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}