{"id":5280,"date":"2010-12-26T19:05:02","date_gmt":"2010-12-26T17:05:02","guid":{"rendered":"http:\/\/www.wjst.de\/blog\/?p=5280"},"modified":"2010-12-28T10:38:11","modified_gmt":"2010-12-28T08:38:11","slug":"osx-10-6-macports-gd-and-finally-circos","status":"publish","type":"post","link":"https:\/\/www.wjst.de\/blog\/sciencesurf\/2010\/12\/osx-10-6-macports-gd-and-finally-circos\/","title":{"rendered":"OSX 10.6, Macports, GD and finally Circos"},"content":{"rendered":"<p>I need live circos plotting for an upcoming seminar next year.<br \/>\nAfter installing the most recent <a href=\"http:\/\/developer.apple.com\/technologies\/xcode.html\">xcode<\/a>, a new <a href=\"http:\/\/www.macports.org\">macports<\/a> and a fresh <a href=\"http:\/\/www.libgd.org\/DOC_INSTALL_OSX\">GD<\/a> library, I issued on the command prompt<\/p>\n<blockquote><p>\nsudo port selfupdate<br \/>\nsudo port install gd2<br \/>\nwhich perl<br \/>\nsudo perl -MCPAN -e shell<br \/>\ncpan> install MD5<br \/>\ncpan> install YAML<br \/>\ncpan> install CPAN<br \/>\ncpan> reload cpan<br \/>\ncpan> install Clone<br \/>\ncpan> install GD<br \/>\ncpan> install GD::Polyline<!--more--><br \/>\ncpan> install List::Util<br \/>\ncpan> install Math::Bezier<br \/>\ncpan> install Math::BigFloat<br \/>\ncpan> install Math::Round<br \/>\ncpan> install Math::VecStat<br \/>\ncpan> install Params::Validate<br \/>\ncpan> install Readonly<br \/>\ncpan> install Set::IntSpan<br \/>\ncpan> q\n<\/p><\/blockquote>\n<p>Even that that did not help ending up with &#8220;Can&#8217;t locate GD\/Polyline.pm in @INC &#8220;. After a second build and install of GD, I finally succeeded (after approx 4 hours!) with<\/p>\n<blockquote><p>\nbin\/circos -conf tutorials\/2\/2\/circos.conf<br \/>\n[&#8230;]<br \/>\ncreated image at \/tmp\/circos-tutorial.png\n<\/p><\/blockquote>\n<p><a href=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2010\/12\/image.png\" data-rel=\"key-image-0\" data-rl_title=\"\" data-rl_caption=\"\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2010\/12\/image.png\" alt=\"\" title=\"\" width=\"400\" height=\"400\" class=\"alignleft size-full wp-image-5289\" srcset=\"https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2010\/12\/image.png 400w, https:\/\/www.wjst.de\/blog\/wp-content\/uploads\/2010\/12\/image-150x150.png 150w\" sizes=\"auto, (max-width: 400px) 100vw, 400px\" \/><\/a><br \/>\n&#8212; the most difficult installation procedure that I have ever seen in 28,83 years of computing experience.<\/p>\n\n<p>&nbsp;<\/p>\n<div class=\"bottom-note\">\n  <span class=\"mod1\">CC-BY-NC Science Surf , accessed 11.04.2026<\/span>\n <\/div>","protected":false},"excerpt":{"rendered":"<p>I need live circos plotting for an upcoming seminar next year. After installing the most recent xcode, a new macports and a fresh GD library, I issued on the command prompt sudo port selfupdate sudo port install gd2 which perl sudo perl -MCPAN -e shell cpan> install MD5 cpan> install YAML cpan> install CPAN cpan> &hellip; <a href=\"https:\/\/www.wjst.de\/blog\/sciencesurf\/2010\/12\/osx-10-6-macports-gd-and-finally-circos\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">OSX 10.6, Macports, GD and finally Circos<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[2,9],"tags":[2694],"class_list":["post-5280","post","type-post","status-publish","format-standard","hentry","category-genetics-biology","category-computer-software","tag-plotting"],"_links":{"self":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/5280","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/comments?post=5280"}],"version-history":[{"count":13,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/5280\/revisions"}],"predecessor-version":[{"id":5333,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/posts\/5280\/revisions\/5333"}],"wp:attachment":[{"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/media?parent=5280"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/categories?post=5280"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.wjst.de\/blog\/wp-json\/wp\/v2\/tags?post=5280"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}