Category Archives: Philosophy

Reproduction, replication, robustness and revelation

those 4Rs are now suggested as standard review criteria – definitely a great proposal as

even if the experiment can be reproduced, replication is often an issue


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Science Spam

As a scientist you are spammed by lab vendors, congress chairmen and journal editors. Here is a selection of the spam that I received during the last 24 hours, all “journal” titles that I have never heard before.

 


Journal of Clinical and Experimental Otolaryngology (Seoul, Korea)

Bildschirmfoto 2015-04-19 um 09.17.00

  Continue reading Science Spam


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Can High Intelligence Be a Burden Rather Than a Boon?

Slashdot occasionally has some interesting science related discussion. The summary of the first response to “Can High Intelligence Be a Burden Rather Than a Boon?”

No amount of sex or expensive liquor or material goods can equate the joys of just proving a theorem. I will forever have this knowledge, that I could have been more, and chose less.


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On verification

Most recently, I came across of another euphoric hygiene hypothesis review and wonder how this could ever happen. The evidence here is mixed and largely ambiguous.
Probably it would be best to follow some basic journalistic rules as summarized in the online “Verification Handbook for investigative reporting”

As with the verification of user-generated content in breaking news situations, some fundamentals of verification apply in an investigative context. Some of those fundamentals, which were detailed in the original Handbook, are:

– Develop human sources.
– Contact people, and talk to them.
! Be skeptical when something looks, sounds or seems too good to be true.
! Consult multiple, credible sources.
– Familiarize yourself with search and research methods, and new tools.
– Communicate and work together with other professionals — verification is a team sport.

Journalist Steve Buttry, who wrote the Verification Fundamentals chapter in the original Handbook, said that verification is a mix of three elements:

– A person’s resourcefulness, persistence, skepticism and skill
– Sources’ knowledge, reliability and honesty, and the number, variety and reliability of sources you can find and persuade to talk
– Documentation


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How religious is the world today

I received an interesting mail today that will be under embargo until next Monday. It is an Gallup International press release from a poll of 63,898 persons who were interviewed globally. In each country a representative sample of around 1000 men and women was interviewed either face to face or online with poll being conducted during September 2014 – December 2014. And voila, here are the results:

ResultsUnweighted Totals :A religious personNot a religious personA convinced atheist
Total638980,630,220,11
AFGHANISTAN21000,870,090
ALGERIA10000,90,080
ARGENTINA10000,720,160,04
ARMENIA10670,930,030,02
AUSTRALIA10060,340,440,14
AUSTRIA10000,390,440,1
AZERBAIJAN10520,340,540
BANGLADESH10000,930,050
BELGIUM10000,440,30,18
BOSNIA10000,650,290,03
BRAZIL20020,790,160,02
BULGARIA10080,520,360,03
CANADA10110,40,410,12
CHINA11500,070,290,61
COLOMBIA10020,820,140,03
CZECH REPUBLIC10000,230,450,3
DENMARK5050,420,40,12
ECUADOR9730,680,270,01
FIJI10020,920,060,01
FINLAND9930,560,320,1
FRANCE10000,40,350,18
GEORGIA10000,930,060,01
GERMANY10000,340,420,17
GREECE10000,710,150,06
HONG KONG5000,260,360,34
ICELAND10570,510,30,14
INDIA5560,760,210,02
INDONESIA5300,820,150
IRAQ0000
IRELAND10050,450,410,1
ISRAEL5750,30,570,08
ITALY10230,740,180,06
JAPAN12000,130,310,31
KAZAKHSTAN5000,640,190,08
KENYA10150,890,070,02
KOREA15000,440,490,06
KOSOVO11040,830,070,01
LATVIA10050,40,410,09
LEBANON10000,80,160,02
MACEDONIA12040,880,080,02
MALAYSIA5000,720,20,03
MEXICO10010,680,240,04
MOROCCO10000,930,040,01
NETHERLANDS10500,260,510,15
NIGERIA8000,830,140,02
PAKISTAN20000,880,10,01
PALESTINIAN TERR.7530,750,180,01
PANAMA12000,810,120,02
PAPUA NEW GUINEA4860,830,040
PERU12000,820,110,02
PHILIPPINES10000,860,120,01
POLAND10040,860,10,02
PORTUGAL10010,60,280,09
ROMANIA10550,770,160,01
RUSSIA10000,70,180,05
SAUDI ARABIA0000
SERBIA10150,720,180,03
SOUTH AFRICA5000,910,080
SPAIN10440,370,350,2
SWEDEN10030,190,590,17
SWITZERLAND10030,380,460,12
THAILAND6140,940,010,01
TURKEY10080,790,130,02
UK10000,30,530,13
UKRAINE5000,730,170,07
USA10160,560,330,06
VIETNAM5000,340,410,13
ZIMBABWE0000

Like it or not, it’s one of the main driving forces of the world.


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Believe it or not – Genetic testing is not ready for widespread use

When I moved from the theological seminar to the medical faculty of Marburg University, I expected to move from a rather liberal but largely closed belief system to a rational environment where belief does not play a central role. It took me only a few years to recognize my misunderstanding. Medicine represents an even more closed belief system („peer review“) than I encountered in theology. There are so many assumptions in daily medical practice that have never been formally tested.

It is commonly assumed that genetic testing is ready for widespread use. But is it true? The authoritative Stanford Encyclopedia of Philosophy has in an excellent contribution about the ethics of belief that there is a „cluster of questions at the intersection of epistemology, philosophy of mind, psychology, and ethics“. And even more

Contemporary analytic philosophers of mind generally use the term “belief” to refer to the attitude we have, roughly, whenever we take something to be the case or regard it as true. To believe something, in this sense, needn’t involve actively reflecting on it: Of the vast number of things ordinary adults believe, only a few can be at the fore of the mind at any single time … Forming beliefs is thus one of the most basic and important features of the mind, and the concept of belief plays a crucial role in both philosophy of mind and epistemology.

Do you want to know your full genome sequence? And do you want it to be published on the internet? Or do you think this is private information that should stay within your body cells where it had been encrypted since the origin of humans? Before we look at any belief surrounding genetic testing, we may have to take a small side-step. Yes, of course, we are dealing here in the first instance with a large industry that has strong commercial interest in genetic testing. Equipment companies selling chemistry and scanners want to increase their sales figures. Insurance companies need data for their policy calculations. Doctors and hospitals want to maximize their income by customer retention. Universities want to increase their attraction by showcasing fancy technology. Even patient advocacy groups are not neutral as they act in the presumed interests of their members. While any of these interests may be good or bad, it is worth to note that the discussion is driven by commercial interests and not ethical convictions.

Having said that, we probably all agree that genetic testing is a research method: useful, interesting and promising to classify, prevent, predict, or treat disease ,. But even after many years it is still a research method of unclear scope, unclear benefit and unclear risks. Should genetic testing really been applied outside of supervised research just because of the economic pressure surrounding it?
I can not see so much benefit of DTC genetic testing right now while there are disturbing case studies how „ordinary humans“ are getting confused when genetic testing is done outside of a research setting. These reports show not only a crude misunderstanding of the predictive value of single nucleotide variants but also a plethora of adverse reactions on nagging questions that are posed but never answered. Some users complained about mix up of samples making even some the claimed success stories finding unknown family members („hey, bro“ ) questionable.

In the pre-internet age, there would have been an intense scientific discussion when a certain method is being ready for prime time. Such a method would have been limited to experts who know something about constraints of a research method, who know how to find additional information in the library or run further lab experiments when the knowledge is being limited. They could consult colleagues from other fields and eventually put these pieces into context. But only a few critical minds could do that, most of them with an academic training over many years.

This landscape has changed, radically changed. The majority of research papers is now being published online. There are no more fences, only a few toll gates, but no gatekeepers. While the church lost most of their authority during the age of enlightment, universities lost their primacy with the advent of the internet. Of course scientists are trying to get back in the discussion by submitting guidelines. I fear, however, that the public perception sees this a bit like in the famous Feynman quote being “as useful .. as ornithology is to birds.“ It is only when an agency like the FDA U.S. Food and Drug Administration issues a warning, that genetic testing is being brought to a (preliminary) end.

The autonomous individual falls back mainly to the information channel he can easily use: the internet search engine. The belief of an individual about the usefulness of genetic testing is influenced by quick google searches showing some bystander comments in an online forum. There is an endless skimming of newsfeeds, magazines and scientific papers. Everything is done at high speed but at the uppermost surface. It reminds me a bit about the 2010 EDGE question „How is the internet changing the way you think“ :

Playwright Richard Foreman asks about the replacement of complex inner density with a new kind of self-evolving under the pressure of information overload and the technology of the “instantly available”. Is it a new self? Are we becoming Pancake People — spread wide and thin as we connect with that vast network of information accessed by the mere touch of a button.
Technology analyst Nicholas Carr wrote the most notable of many magazine and newspaper pieces asking “Is Google Making Us Stupid”. Has the use of the Web made it impossible for us to read long pieces of writing?

Social software guru Clay Shirky notes that people are reading more than ever but the return of reading has not brought about the return of the cultural icons we’d been emptily praising all these years. …
Frank Schirrmacher, [former ]Feuilleton Editor and Co-Publisher of Frankfurter Allgemeine Zeitung, has noticed that we are apparently now in a situation where modern technology is changing the way people behave, people talk, people react, people think, and people remember. Are we turning into a new species — informavores? — he asks.

The belief about benefits of DTC genetic testing is certainly not influenced by any European or American Scientific Society Ethics Committee. It is influenced by those brief sometimes adequate, sometimes inadequate information pieces in the internet , TV, radio or newspaper snippets.

When it comes to any direct action (blood drawing, selection of a specific laboratory, test system employed, readout and interpretation of results) the patient belief’ is further shaped by the doctors belief system. A detailed description of the attitude towards genetic testing, in particular in the relationship between doctor and patient, would be an enormous enterprise, needing a large cluster of experts at the intersection of epistemology, philosophy of mind, psychology, and ethics, as well as social scientists, biologists, among others. And who will even judge what is a correct assumption? Is a certain genetic variant really a pathogenetic variant? Even the most advanced attempts so far, just lists bullet points only.

Believe it or not, genetic testing for health related outcomes is still a research method.

References
 http://plato.stanford.edu/entries/belief
 http://www.pnas.org/content/104/21/8685.full
 http://jama.jamanetwork.com/article.aspx?articleid=1840236
 http://www.nature.com/ng/journal/v34/n4/abs/ng0803-347.html
 http://www.nytimes.com/2013/12/31/science/i-had-my-dna-picture-taken-with-varying-results.html?ref=science&_r=0
 http://www.theguardian.com/science/2013/jun/08/genome-sequenced
 http://www.bloomberg.com/news/2012-02-15/harvard-mapping-my-dna-turns-scary-as-threatening-gene-emerges.html
 http://www.spiegel.de/spiegel/print/d-57223342.html
 http://www.spiegel.de/wissenschaft/mensch/23andme-gentest-firma-vertauscht-dna-ergebnisse-ihrer-kunden-a-699436.html

 http://www.fda.gov/ICECI/EnforcementActions/WarningLetters/2013/ucm376296.htm
 http://edge.org/annual-question/how-is-the-internet-changing-the-way-you-think
 http://www.nature.com/nature/journal/v508/n7497/full/nature13127.html


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Cause and effect in observational data: Magic, alchemy or just a new statistical tool?

Slashdot has a feature on that

Statisticians have long thought it impossible to tell cause and effect apart using observational data. The problem is to take two sets of measurements that are correlated, say X and Y, and to find out if X caused Y or Y caused X. That’s straightforward with a controlled experiment… But in the last couple of years, statisticians have developed a technique that can tease apart cause and effect from the observational data alone. It is based on the idea that any set of measurements always contain noise. However, the noise in the cause variable can influence the effect but not the other way round. So the noise in the effect dataset is always more complex than the noise in the cause dataset. .. The results suggest that the additive noise model can tease apart cause and effect correctly in up to 80 per cent of the cases (provided there are no confounding factors or selection effects).

and jmlr a more theoretical account

Based on these deliberations we propose an efficient new algorithm that is able to dis- tinguish between cause and effect for a finite sample of discrete variables.

tbc


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I think this manic desperation to endlessly extend life is misguided and potentially destructive

A quote from the ethicist Ezekiel J. Emanuel

But here is a simple truth that many of us seem to resist: living too long is also a loss. It renders many of us, if not disabled, then faltering and declining, a state that may not be worse than death but is nonetheless deprived. It robs us of our creativity and ability to contribute to work, society, the world. It transforms how people experience us, relate to us, and, most important, remember us. We are no longer remembered as vibrant and engaged but as feeble, ineffectual, even pathetic.

Mors certa, hora incerta.


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How to cope with the unexpected – incidental findings

Jane Kaye from Oxford was speaking on the 15th Oct 2014 in Coimbra during the ChipMe meeting about the question “How to cope withe unexpected – incidental findings”.

20141015_111414_DSCF5038

The talk basically refers to a new EJHG paper dealing with UK10K issues. The UK10K research project Continue reading How to cope with the unexpected – incidental findings


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An epidemic of nonsense

13 € for a paperback, this is “An Epidemic of Absence. A new way of understanding allergies and autoimmune disease”. It is written by Moises Velasquez-Manoff , a journalist otherwise working for the “The Christian Science Monitor”. As his online bio reports “he dreamed of writing novels”. I would wish he would done so.

The outset is rather clear – Velasquez-Manoff wants to find a cure for his own autoimmmune disease. While this may be a legitimate justification for collecting information about a given topic, the method by Velasquez-Manoff is not. At a first glance, it looks like a serious book, well written, interesting facts presented in a coherent manner followed by numerous references. Maybe that made such an impression on the (numerous) positive reviewers. Maybe all the positive reviewers are experienced science journalists that judged by the overall impression plus some common sense plus some specific knowledge. But, Velasquez-Manoff did never hear the other side (on p.310, he even admits who has read and commented on sections of the manuscript: exclusively scientists in favor of the hygiene hypothesis). To recognize that you need to be a scientist – journalists would not notice that.

I compiled a long list the errors but feel now, that it would be too time consuming to write that down here. As far as it concerns me (p. 99) there was no grant to win in Munich as the study Velasquez-Manoff is talking about was a commissioned study. And sorry (p.100) I wrote the full grant application comparing East and West Germany children and did large part of the field study. Furthermore, I am not convinced (p.101) that the East West German differences ever supported the hygiene hypothesis, it is something different. And it was not in 2000 (p.102) that someone published on day care (p. 102), we wrote that already in 1999. Audiatur et altera pars, yea, yea.


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Zur Geschichte der Heilpraktiker

Der im letzten Jahr verstorbene und nicht unumstrittene Münchner Toxikologie Daunderer schrieb auf seiner toxcenter Webseite über das Heilpraktikerwesen als ungeliebtes Hitlererbe:

Kritiker halten die Existenz des Heilpraktikerberufs für einen Betriebsunfall der deutschen Geschichte. … Weil Deutschland im frühen 19. Jahrhundert den Trend zum Zentralstaat verpennt hatte, gab es bis weit ins 20. Jahrhundert hinein keine einheitliche Regelung dazu, was in deutschen Landen unter einem Heilberuf zu verstehen sei. Heilen durfte, wer von seinem Fürsten die Erlaubnis bekam. Erst die Nazis sahen hier Regulierungsbedarf und schufen mit sicherem Gespür für monströse Wortschöpfungen die Reichsheilpraktikerschaft. Dadurch wurden tausende medizinische Therapeuten im Gebiet des Deutschen Reichs ohne ärztliche Ausbildung auf einen Schlag legalisiert. “Der Hintergedanke war, möglichst keine neuen Heilpraktiker mehr zuzulassen und unsere Zunft auf diese Weise aussterben zu lassen”, sagt Arne Krüger vom Fachverband Deutscher Heilpraktiker. [Der Text stammt vermutlich nicht von ihm selbst, sondern von Philipp Grätzel von Grätz, 2006, Heilpraktiker – ein Beruf wie ein Leberkäs].

Selbst wenn es nicht so war, es passt  recht gut in die NS Ideologie, wie auch Andreas Brieschke schreibt:

Es … ließen sich große Teile der “zurück zur Naturbewegung” von der Blut-und-Boden-Ideologie der Nazis einfangen und für die sogenannte Neue Deutsche Heilkunde instrumentalisieren. Die an sich richtigen präventiven Ansätze der weitgehend unpolitischen Naturheilkundler wurden so für die Stählung des deutschen Menschen umgedeutet und Gesunderhaltung zur “Pflicht des Einzelnen gegenüber dem Volkskörper”. Die Weiterführung dieser Gedanken führte dann zur Euthanasie.
Die Einbindung der Laienbehandler in die NS-Gesundheitspolitik und deren Legalisierung war in der NSDAP stark umstritten, gab es doch neben den Natur und Mythen verherrlichenden Teilen auch die der (pharmazeutischen) Industrie zugewandten Strömungen. Sie führte erst im Februar 1939 zum Erlass des Heilpraktikergesetzes.

Auch wenn zunächst geplant war, keine Heilpraktiker mehr zuzulassen, misslang das Vorhaben. Dies nicht zuletzt auch durch das Ansehen der jüdischen Ärzte und Professoren, die allesamt ihre Approbation verloren hatten, sich nun notgedrungen als Heilpraktiker betätigen mussten und damit zu Unrecht den Heilpraktikern Ansehen erwarben.. Dann aber ging der Nationalsozialismus unter, wie Daunderer weiter ausführt.

Das Heilpraktikergesetz hatte Bestand. Die Bundesrepublik Deutschland allerdings beschloss, dass ein Zulassungsverbot für Heilpraktiker verfassungswidrig sei. Fortan wurden die Heilpraktiker im Westen Deutschlands nicht mehr gesetzlich verhindert, sondern gesetzlich protegiert. Lediglich die DDR schaffte den Beruf ab, mit der Folge, dass zum Zeitpunkt, als die Mauer fiel, noch genau elf Heilpraktiker im Osten aktiv waren, allesamt solche, die schon vor der Staatsgründung der DDR ihren Job angetreten hatten… Als ein gewisses Korrektiv zur Verhinderung der totalen Willkür sehen die Verbände die nicht ganz einfache Heilpraktikerprüfung. Hier fallen regelmäßig 75 bis neunzig Prozent der Bewerber durch, vor allem solche mit Minimalausbildung. Auch das aber kann Beobachter von jenseits der deutschen Landesgrenzen nicht tiefer beeindrucken: “In Österreich stehen Ärzte und Gesundheitspolitiker dem Beruf des Heilpraktikers sehr skeptisch gegenüber. Wir vertreten die Auffassung, dass nur derjenige Menschen behandeln sollte, der eine medizinische Ausbildung mit festgelegtem Curriculum absolviert hat”, sagt beispielsweise Dr. Felix Wallner von der Österreichischen Ärztekammer. Um zu verhindern, dass obskure Heiler von außen ins Land kommen, verbietet Österreich die Heilpraktikerkunst als Kurpfuscherei sogar strafgesetzlich.

Wie stellt sich Europa nun zu dem deutschen Heilpraktikergesetz? Wikipedia zeigt nur eine sektorale Erlaubnis in der Schweiz, so dass langfristig wohl eher mit der Auhebung  der deutschen Ausnahmeregel zu rechnen ist.

Es gibt zwar durchaus europäische Lobbyarbeit wie der EFCAM, aber der Trend spricht wohl doch gegen den langfristigen Bestand des Heilpraktikerwesens. England verabschiedete sich jedenfalls 2012 wieder recht schnell von dem mit Euphorie gestarteten alternativen Ausbildungsprogramm, Homöopathie ist eben doch nur “18th century science”.

4-10-2014
https://ratgebernewsblog2.wordpress.com/2014/01/20/der-heilpraktiker-narrenfreiheit-grosenwahn-und-gefahrliche-folgen/

21-8-2017
Plötzlich kommt wieder Wind auf von Ärzteseite http://www.spiegel.de/gesundheit/diagnose/heilpraktiker-den-gegenwaertigen-irrsinn-nicht-laenger-hinnehmen-a-1163792.html

15-7-2019
3 Tote, weil ein Heilpraktiker eine “für das Abwiegen von Kleinstmengen ungeeignete Waage” verwendete.

11-8-2019
Ärztekammern streichen Homöopathie Weiterbildung “Jodeldiplom”

22-6-2020
Bundesregierung plant Abschaffung des Heilpraktiker Standes

21-4-2021
Rechtsgutachten Christof Stock

15-7-2023
“Das Heilpraktikerwesen” ist grundgesetzlich geschützt – kein Wunder mit der Vorgeschichte . Ansonsten warten wir auf das nächste Gutachten. Mit der aktuellen Regierungskoalition wird  es aber nicht anders gehen wie aktuell mit dem Whistleblower-,  Heizung-, Selbsbestimmung- oder Sterbehilfegesetz.

https://freieheilpraktiker.com/aktuelles/heilpraktikerrecht-2021/313-werden-die-heilpraktiker-innen-abgeschafft 15.7.2023

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Durchgeblättert: Selbstmarketing im Netz

Auf der academics.de Webseite gibt es ein neues Feature über erfolgreiches Selbstmarketing, Kernsatz

Beim Selbstmarketing geht es nicht nur um Medienpräsenz und Aufmerksamkeit. Wissenschaftskommunikation ist auch bei der Vergabe von Fördergeldern wichtiger geworden.

Das ist schnell gesagt, aber nicht bewiesen. Dass es bei der DFG extra Fördermittel für den Bereich Kommunikation gibt, heisst nicht, dass ich mehr Geld für Forschung bekomme wenn ich einen Blog schreibe. Es ist eher anders herum, daß Geld das für die Kommunikation ausgegeben wurde, nicht mehr für Forschung ausgegeben werden kann.
Und dass ein Mädel für ihre Ameisenbären-Expedition nun keinen Drittmittelantrag, sondern Sciencestarter bemüht hat, ist auch keine so recht durchschlagende Argumentation für kontinuierliches Forschungsprogramm. Dann lamentiert der freie ZEIT Online Mitarbeiter noch etwas über fehlende Ausbildungsangebote an der Uni

… Eine Pflicht zur Kommunikation besteht trotz vieler Vorteile natürlich nicht. Jeder Forscher hat auch heute noch das Recht, sich zurückzuhalten und nur zu forschen. Junge Forscher sollten sich aber wenigstens grundlegend mit Wissenschaftskommunikation und Selbstmarketing beschäftigen.

Hoffentlich nicht! Junge Forscher sollen Forschung machen und kein Marketing. Und darf ich mir etwas für Wissenschaftsjournalisten auf academics.de wünschen? Etwas mehr Ahnung von Wissenschaft.


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