Believe me, it ‘s not hygiene

I have written earlier about the hygiene hypothesis and my doubts that more or less “hygiene” influences the development of allergy (blog | paper). As we are further swamped with regular statements like Continue reading Believe me, it ‘s not hygiene


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1% decoded

Nature web focus today reports an overview of the four year project Encode (ENCyclopedia Of DNA Elements) that tried to identify all functional elements in 1% of the human genome. In addition, there are 28 companion papers in the June 2007 issue of Genome Research. The Nature issue includes a pull-out poster featuring a screenshot of the UCSC Genome Browser.
I am still in the process of reading all the GWA studies, so don´t expect any intelligent remarks. The main point seems to be that the majority of the human genome is being transcribed which is in sharp contrast to the textbooks (Strachan/Read IInd ed, p142 says that only ~3% of the nuclear genome is being transcribed). Using gene centric SNP panels in some of the GWAs therefore have not been such a good idea, yea, yea.


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Karl Drais

190 years ago, today on 12th June 1817, Karl Drais presented to the world his running machine (“Laufrad”, “Velociped” – as he called it, “Draisine” – as others called it). As I believe it is the first bicycle (bi – cycle) and therefore one of the most advanced inventions ever made. It is an invention that I need 2 hours every day and an invention that could cure many of the problems discussed now at G8 conference in Heiligendamm. Continue reading Karl Drais


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Too much checking on the facts has ruined many a good news story

So far I naively quoted others – “only to better express myself” (Michele de Montaigne). This will, however, change now after having read “The Quote Verifier – who said what, where and when” by Ralph Keyes. He nicely explains in the foreword that the misattribution process is not random Continue reading Too much checking on the facts has ruined many a good news story


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Genome Browser Bug

Here I describe a bug in the UCSC Genome Browser display that I found this morning. When locating a SNP on the human genome (where I have only surrounding sequence) I usually do a quick BLAT search Continue reading Genome Browser Bug


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Kuhn is Kant on wheels

I liked that quote from Professor Lipton in a recent essay about the “World of Science” where he repeats his earlier “Kuhn is Kant on wheels“:

Like Kant, Kuhn held that the world described by science is a world partially constituted by cognition. But whereas Kant held that there is only one form the human contribution could take, Kuhn argued that the contribution changes as science changes. Kuhn is Kant on wheels.

I am more attracted by an objectivist than a constructivist view — where the world has its own structure that is only revealed by science (at least in part) and religion (also in other parts). As I am currently reading Klemke – probably one of the best books in the field – maybe that will change my mind? Nay, nay.


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Hunting down the obesity gene

Although the authors of a previous paper still desperately try to rescue their claim another gene has made the race: FTO described by Freyling, Scott and Dina. I have heard that obese people may not see their toes anymore but I haven´t heard of any fused toes, did you?


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Impact – the only currency that counts?

From Third Culture:

… a competent connoisseur of French wine is not one who has drunk the largest number of different bottles of wine, but someone who is able to make sense of labels, appelations, regions [and] names of grapes…

Cheers!


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Turning pale

Humans have always been attracted by white animals, tigers, elephants and crocodiles (BTW great melanosome pictures can be found at PLOS.
There seem to be also some evidence that light skin developed only recently as reported in a meeting report in Science by April, 20 based on sweeps around SLC24A5. This is somewhat in contrast to findings published more or less at the same time by the same group (but not mentioned in the meetings report) that a highly complex network is influencing skin color. Continue reading Turning pale


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