Ever since I created a linkage map of the human genome with old-fashinoned crimap, we are talking about “mapping” diseases and genes. GIS mapping also ever increases – see the interesting first monday article Many, many maps: Empowerment and online participatory mapping, that has a lot of details about grassroots initiatives building on Keyhole/Google technology. I learned also about Common Census – looks like grassroot epidemiology.
I have tested several programs for their usefulness of showing Powerpoint slides on the web- some packages create standalone pages only while others have major problems with figures, graphics or transitions (or are quite expensive).
A rather simple method works at least in part – loading a .ppt file in Open Office Impress and exporting it to .swf. The flv player, however, creates a messy display as it doesn’t use the full display area.
Another option is to export all pages as 800×600 .jpg files and mount them in File Show Maker to a standalone flash film – as seen below in a talk that I have given in 2006:
Instead of bookmarking I am printing instead with PDFcreator and let GDS later index these files. Pages (in particular supplements and news stories) are frequently vanishing while printing into a file lets me store a local copy. Printing to a PDF file is only one click away if you use the following “save” options:
Athough Google desktop is able to do it, there is no clear API to instruct Thunderbird to display a given email stored in its mail box (knowing the folder & message ID)
Here is how Google Desktop Search (GDS) links to an email
What I have found out so far by comparing different links
(1) is the fixed parameter relating to my hard disk??
(2) is a variable parameter relating to the physical location of my \daten\Mail\thunderbird\imap\INBOX file??
(3) is the unique Message-ID that may be seen in Thunderbird with the View Header plugin
(4) the variable salt/seed value that is stored in the registry at HKEY_CURRENT_USER\\Google\\CustomSearch\\Google Desktop Search\\Url which may be retrieved with a 2 line perl script.
So I am ready to construct URLs that link to an email by using GDS. This is, however, not very elegant. Isn’t there any other way (maybe by a Thunderbird extension) to construct and follow links directly to emails? Can somebody trace with Sysinternals Process Explorer what GDS spits out and follow it up at XUL planet ?
43 folders writes:
Remember that your blog is only incidentally a publishing system or a public website. At its heart, your blog represents the evolving expression of your most passionately held ideas. Itâ€™s a conversation youâ€™re holding up with the world and with yourself â€” a place where you can watch your own thoughts take different shapes and occasionally surprise you with where they end upâ€¦
wow – couldn’t say that in a better way.
without words, surf to shutdownday.org.
Being a former curator for a genetic disease database, I received a PM that explained why the foundation of the Human Genome Variation Society did not include most of the HUGO Mutation Database Owners — most did not join as they found it difficult to pay for membership. This reflects the overall frustration in obtaining funds for databases projects that are between research and service. Now, a new initiative for the Human Variome Project (HVP) is started to create a focus pulling the whole vision together and to assist in fundraising. Meeting details are at www.humanvariomeproject.org. I strongly support this initiative. All genetic variation databases are sharing a high interest in the community but zero interest at funding bodies (more). I have a dream…
Scientists are frequent travellers – hopefully you have always your harddisk encrypted. There are many companies that offer to trace your computer like Computrace(R), zTrace(R), LapTrak(R), BoomerangIt(R), LoJack(R) and PC-Guardian(R). Save your $/€ for your next experiment, here is the trick: During the next boot your laptop will send out a http request to any server you like. You simply need to watch the server logfile if your stolen laptop is phoning home…
For installation please download LaptopService.cmd, LaptopService.reg and two small binaries from the windows ressource kit. Adjust path and server name before running LaptopService.cmd. VoilÃ , that’s it – for a good joke look at Slashdot.
I had to manage a system crash this weekend – where even the rescue console did not work. I learned that (1) my old Knoppix CD could neither write to the hard disk nor (2) read access a truecrypt partition. (3) Too late, I should have spent some money on ghost(r) or true image(r)! I further learned on the next day that (4) Bart PE does not work with OEM versions, (5) truecrypt versions are not compatible and (6) a grml iso is not helpful at the system prompt. Ultimately I came across (7) sysresccd that includes
- GParted: partition resize tool
- GNU Parted: a text tool for editing disk partitions
- Partimage: a partition image tool
- Plenty file systems tools allow you to format, resize, and debug an existing partition of your hard disk
- Ntfs3g allows you to mount your partition and get a full read/write access to the NTFS partition
- Sfdisk allows you to backup and restore your partition table
wow, simply a lifesaver.
Most people in the field search Pubmed but there is another site that I frequently visit – the European patent database that often have more concise information. Look at current allergy patents – the last one will definitely work you may also use a big plastic bag ;-)
Be aware that being cynical is probably bad for your heart.
Pubmed often leads you to dead ends – journal citations without a link to the journals’ home. Google helps sometimes but is always time consuming. As a little gift for you, I have written a small bookmarklet that will scan the Regensburg library files – just left click on the
link below and move it to your browser toolbar. With just a mouse click you can then locate the journals homepage.
Another approach – the LibraryLookup Bookmarklet Generator.
<body oncontextmenu=”return false;”>
Please try a right click now…
When visiting the offending website, type the following into the URL bar of your browser:
Happy browsing, yea, yea.
How to recognize photoshopped pictures? This will be a routine task for future editorial process (BTW I already recognized a faked gel gel picture where the edges and density of the bands looked somewhat artifical). However, with the ever increasing technical capacities we probably need non-destroyable, watermarked pictures from professional scanning and digitizing equipment.
In the meantime, check Wikipedia and the links there. I believe that the majority of the faked pictures could have been detected by splitting up color channels and looking at non-continous transitions of hue (“Farbton”), saturation (“Sättigung”) and brightness (“Helligkeit”) or grey value. This will even work with scanned figures although I would recommed to check original computer files (that may always be electronically stamped by previous publishers). DonÂ´t miss the website of the mp3 developers).
Here is another examples how to recognize photoshop spoof:
set the hue to a low setting, the saturation to a higher setting, and mess with the light and look for blotches of color that donâ€™t follow the rest of the image
22-2-07: The JBC has now adopted an explicit policy
â€œNo specific feature within an image may be enhanced, obscured, moved, removed, or introduced. The groupings of images from different parts of the same gel, or from different gels, fields or exposures must be made explicit by the arrangement of the figure (e.g. using dividing lines) and in the text of the figure legend. Adjustments of brightness, contrast, or color balance are acceptable if and as long as they do not obscure or eliminate any information present in the original. Nonlinear adjustments (e.g. changes to gamma settings) must be disclosed in the figure legend.
11-9-07 Hamin Farid has developed tools to detect digital tampering.